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protein databank (pdb code: 1tca)  (Databank Inc)
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protein crystal structure t. thermophilus ef-g  (Databank Inc)
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Protein Crystal Structure T. Thermophilus Ef G, supplied by Databank Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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protein data bank accession code 7agx  (Databank Inc)
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protein databank code 1nx3  (Databank Inc)
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protein databank (pdb) entry code 4ow2  (Databank Inc)
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<t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
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crystal structure of laccase  (Databank Inc)
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<t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
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protein databank (pdb) code 1jk8  (Databank Inc)
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<t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
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protein databank accession code 1gme  (Databank Inc)
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<t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
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protein databank code 1exv  (Databank Inc)
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<t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
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protein databank accession code 3tvf  (Databank Inc)
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<t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
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protein databank (pdb) under the accession code 7l2c  (Databank Inc)
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<t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
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protein databank (pdb) code 6o0a  (Databank Inc)
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<t>A)</t> <t>YopM_34–481</t> was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal <t>(PDB</t> code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .
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Image Search Results


A) YopM_34–481 was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal (PDB code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .

Journal: PLoS Pathogens

Article Title: Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells

doi: 10.1371/journal.ppat.1005660

Figure Lengend Snippet: A) YopM_34–481 was crystallized and its structure was solved ( ; ). Stereo view shows ribbon representation of one asymmetric unit of the YopM_34–481 crystal (PDB code 4OW2). The asymmetric unit contains four molecules equivalent to two biological assemblies each represented by a dimer. YopM molecules of one dimer are colored in yellow and green and of the other dimer in light grey and grey. (B-D) The YopM_34–481 dimer, the DDX3_51–418 construct and the YopM_34-481/DDX3_51–418 complex were analyzed by small angle X-ray scattering (SAXS). B) The SASREF-model of YopM_34–481 shown as transparent grey surface representation and the crystal structure of the YopM_34–481 dimer in ribbon representation are superimposed. C) The SASREF-model of DDX3_51–418 shown as transparent grey surface representation and the crystal structure of the ATPase domain of DDX3 (residues 167–418, PDB code 2I4I) are superimposed. D) The SASREF-model of the YopM_34-481/DDX3_51–418 complex shown as transparent grey surface representation is superimposed with the crystal structures of DDX3 (residues 167–418; and the YopM_34–481 dimer (as presented in A). For experimental SAXS data see and .

Article Snippet: Relevant data of the YopM_34-481 crystal structure from Y. enterocolitica WA314 are deposited at the Protein Databank (PDB) ( http://www.rcsb.org/pdb/home/home.do ) with entry code 4OW2.

Techniques: Construct